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Species belonging to selected taxon:
Medicago truncatula
ABOUT THIS RECORD
ID:
MNEST040754
species:
Medicago truncatula
miRNA family:
MIR2629
source:
miRBase, original name:
mtr-MIR2087
(
MI0010544
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GAAGTAAAGAACCGGCTGCAG
miRNA*
GCAGTCGGTTTCTTACTTCGG
mismatches:
2
bulges:
0
View larger
pre-miRNA
GCTTGATGAAAACTGCTCTTGACACATATGATAGAGCTAAAAAACATATGTAAAAGACGAAAATGCCCATGTAGCAGTTTACTACC
GAAGTAAAGAACCG
GCTGCAG
TTAACTGCTGAAGTGTGAAGTTTTTTTTTTTTTTTCTTTTTCGTCGGCAGTTAACT
GCAGTCGGTTTCTTACTTCGG
TAGTTAACCGTTGCAG
GGGCATTTTCGTCATTTACATGTGTTTTTCAGCCCTATCATATGTGTCAACAGCAATTTTCTAGC
dot-bracket secondary structure
(((....(((((.((((.((((((((((((((((.(((.(((((((((((((((.(((((((((((((.((((((.(((.((((((
(((((((..(((((
(((((((
(((((((((((.....((((...............))))....)))))))))))))
))))))))))..)))))))))
)))).))).)))))).
))))))))))))).))))))))))))))).))).)))))))))))))))).)))).))))).)))
SIMILARITIES
miRBase
mtr-MIR2629c
:
0.00005
PMRD
mtr-miR2087
:
2e-112
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Northern, Solexa
references
[
1
] Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T,
BMC Genomics. 9:593(2008).
,
"High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families"